CHEM 331 - BIOCHEMISTRY

BIBLIOGRAPHY 

Recent References

1. New Hints into the Biological Basis of Autism. Science. 294, pg 34 (2001)
2. Biologists Join the Dots (Quantum). Nature. 413, pg 450 (2001)
3. A Molecular Whodunit (Influenza Pandemic).  Science. 293. pg 1773, 1776 (2001)
4. Testing Telomerase. Nature. 413, pg 370 (2001)
5. Orgel. A simpler nucleic acid (origin of life) Science. 290, pg 1306 (2000)
6. Lusis.  Atherosclerosis (a review) Nature. 407. pg 233 (2000)
7. Mangelsdorf et al. New Ways to Lower Cholesterol . Science. 289. pg 1446 (2000)
8. Garcia et al. The Cholesterol Quartet.  Science. 292. pg 1310, 1394 (2001)
9. Fuentes-Prior et al. Structural basis for the anticoagulant activity of the thrombin-thrombomodulin complex.  Nature. 404, pg 449, 518 (2000)
10. Dennis et al. Peptide exosite inhibitors of factor VIIA as anticoagulants.  Nature. 404, pg 449, 465 (2000)
11. Okamoto et al. A cholesteryl ester transfer protein inhibitor attenuates atherosclerosis in rabbits.  Nature. 406, pg 203 (2000)
12. Kersten et al. Roles of PPAR;s in health and disease.  Nature. 405, pg 421 (2000)
13. The Divine Cytokine (review of cytokine nomenclature) Scientist. pg 36 April 3, 2000.
14. HDL metabolism.  Nature. 400, pg 816 (2000), Science, 285, pg 814 (1999) (both about Tangier's disease and relationship to HDL)

Older  References

GENERAL INFORMATION

• The Two Cultures: Chemistry and Biology. Kornberg, Arthur (1987) Biochemistry (Perspectives) 26, 6888-6891.
• Basic Research: the Lifeline of Medicine. Kornberg, Arthur (1992) News and Features of unknown Journal 6, 3143-3145.

LIPIDS

• LIposomes, Lasic, Danilo. (1992) American Scientist. 80, 20-30.
• Liposomes Revisited, Lasic and Papahadjopoulos. (1995) Science. 267, 1275-1276.
• Doxorubicin in Sterically Stabilized Liposomes, Lasic. (1996) Nature. 380, 561-562.

PROTEIN STRUCTURE/FOLDING

• Measurement of the Beta Sheet Forming Propensities of Amino Acids, Minor, D.L. & Kim, P. (1994) Nature, 367, 660-663.
• Structural Basis of Amino Acid -Helix Propensity, Blaber, M. Zhang, X., & Matthews, B. (1993) Science, 260, 1637-1640.
• The "Bio" in Biochemistry: Protein Folding Inside and Outside the Cell, Ellis, R. stapled with Principles of Chaperone-Assisted Proein Folding: Differences Between in Vitro and in Vivo Mechanisms. (1996) Science, 272, 1448-9, and 1497-1501.
• Moleculear Chaperones in Cellular Protein Folding. Harti, F. Ulrich. (1996) Nature, 381, 571-580.
• Folding Proteins Caught in the Act, Service, C. (1996) Science, 273, 29-30.
• Scientist Refine Understanding of Protein Folding and Design, Borman, S. (1996) Chemical and Engineering News, May 27, 29-34.
• The Protein Folding Problem, Chan, H, & Dill, K. (1993) PhysicsToday, 24-32.
• The Protein Folding Problem, Richards, F. (1991) Scientific American, January, 54-63.
• A Kinetic Method to Evaluate the Two-State Character of Solvent-Induced Protein Denaturation, Micke. M. & Schmid, F. (1994) Biochemistry, 33, 12930-12935.
• The Prion Disease, Prusiner, S. (1995) Scientific American, 48- 57.
• Putting Prions to the Test, Mestel, R. (1996) Science, 273, 184-185.
• Missfolding the Way to Dieseae, Taubes, G. (1996) Science, 271, 1493-1495.
• Amyloid Fibrils: Mutations Make Enzymes Polymerize, Perutz, M.F, stapled with Instability, Unfolding, And Aggregation of Human Lysozyme Variants Underlying Amyloid Fibrillogenesis, Booth, D. R. et. al. (1997) Nature, 385, 787-794.

CARBOHYDRATES

• Carbohydrate's Complexities: Glycobiochemists Attanin a More Detailed Understnading of the Involvement of Carbohydrates in Intricate Life Processes, Borman, S. (1996) Chemistry and Engineering News, Sept. 30, 34-40.
• Oligosaccharides Coming of Age, Rouhi, A. (1996) Chemistry and Engineering News, Sept. 23, 62-66.

DNA/PROTEIN INTERACTIONS; TRANSCRIPTION

• Protein-DNA Recognition: New Perspective and Underlying Themes, von Hippel, P. (1994) Science, 263, 769-770.
• Coupling of Local Folding to Site Specific Binding of Proteins to DNA, Spolar, R. & Record, T. (1994) Science, 263, 777-784.
• Mining Treasures From Junk DNA, Nowak, R. (1994) Science, 263, 608-610.
• Transcriiptional Activation of Heat Shock Genes, Morimoto, R. Cells in Stress: (1993) Science, 259, 1409-1410.
• The Regulation of Transcription by Phosphorylation, Hunter, T. & Karin, M. (1992) Cell, 70, 375-387.
• Target Gene Replacement, Capecchi, M. (1994) Scientific American, March, 52-61.
• What Happens to Nucleosomes duringTranscription, van Holde et al. (1992) J. Biol. Chem., 267, 2837-2840.
• Toward more Measurement in Biology, Maddox, J. (1994) Nature, 368, 95.
• Histones as Regulators of Genes, Grunstein, M. (1992) Scientific American, October, 68-75.
• Polymerase Chain Reaction, Amhein, N. & Levenson, C. (1990) Chem. & Eng. News, October, 36-47.

OXYGEN AND FREE RADICAL PACKET

• Superoxide Dismutases, Fridovich, I. (1989) J. Biological Chemistry, 7761-7764. 4/26/93
• Protein Oxidation and Aging, Stadtman, E. (1992) Science, 1220-1223.
• Oxidative Damage to Behavior During Aging, Floyd, R. (1991) Science, (December) 1597. 4/26/93
• Signs of Damage by Radicals: Smoking and Health, Csillag, C. & Aldhous, P. (1992) Science, 258, 1875-76. 4/26/93
• Mitochondrial Genetics: A Paradigm for Aging and Degenerative Diseases?, Wallace, D. (1992) Science, 256, 628-632.
• Did Radicals Strike Lou Gehrig?, McNamara, J. & Fridovich, I. (1993) Nature, 362, 20-21.

CATALYSIS

• The Interplay Between Chemistry and Biology in the Design of Enzyme Catalyst, Schultz, P. (198) Science, 240, 426-433.
• Hydrogen Tunneling in Enzyme Reaction, Cha, Y. (1989) Science, 243, 1325-1330.
• How do Enzymes Work, Kraut, J. (1988) Science, 242, 533-540.
• Catalysis: New Reaction Pathways, Not Just a Lowering of the Activation Energy, Haim, A. (1989) J. Chem. Ed., 66, 935-937.
• Enzyme Catalysis: Not Different, Just Better, Knowles, J. (1991) Nature, 350, 121-124.
• Enzyme Reactivity from an Organic Perspective, Menger, F. (1993) Acc. Chem. Res., 26, 206-212.
• Understanding the Rates of Certain Enzyme-Catalyzed Reactions:Protein Abstraction from Carbon Acids, Acyl-TransferReactions, and Displacement Reactions of Phosphoidesters, Gerlt, J. & Gassman, P. (1993) Biochemistry, 32, 11943-11952.
• Remarkable (1013) Rate Enhancement in Phosphonate Ester Hydrolysis Catalyzed by Two Metal Ions, Tsubouchi & Bruice (1994) J. Am. Chem. Soc., 116, 11614.
• Our Primary Source of ATP, Cross, R. (1994) Nature, 370, 594-596
• A Structural Explanation for Enzyme Memory in Nonaqueous Solvents, Yennawar, H. et al. (1995) J. Am. Chem. Soc., 117, 577-585.
• Why Nature Chose Phosphate, Westheimer, F. (1987) Science, 235, 1173-1178
• Why Calcium?, Ochiai, E. (1991) J. Chem. Ed., 68, 10-12.
• A Proficient Enzyme, Radzicka & Wolfenden, (1995) Science, 267, 90-93.

 03/22/2002