**Structure & Reactivity in Chemistry**

**Molecular Orbitals**

**MO6a. Assembling the Pieces**

So far, we have looked at the ways in which pairs of atomic orbitals could combine to form molecular orbitals -- to form bonds. Just as we think of there being a progression of atomic orbitals from lowest energy to highest (1s, 2s, 2p, 3s...), we can organise these molecular orbitals by order of their energy.

To a great extent, the order of molecular orbitals in energy can be considered to follow from the order of the atomic orbitals from which they are constructed. There are some departures from that rule, sometimes, but that's the simplest place to start. So, in a molecule, the lowest-energy molecular orbitals would be the ones formed from the lowest-energy atomic orbitals, the 1s orbitals.

What we see here is a molecular orbital
interaction diagram. The middle of the diagram is just the molecular
orbital energy diagram. It is analogous to the atomic orbital energy
diagram (which goes 1s, 2s, 2p, 3s...). The order of energy so far is σ_{1s}, σ_{1s}*.
The sides of the diagram just refer back to where those molecular orbitals
came from, with dotted lines to guide you from one place to another.
Altogether, the picture says that the 1s orbital on one atom and the 1s
orbital on the other atom can combine in two different ways, producing the
lower-energy, bonding
σ_{1s} and the higher-energy, antibonding σ_{1s}*.

Note that we have not added any electrons to that molecular orbital energy diagram yet, but when we do, we will just fill them in from the bottom up, just like we would an atomic orbital energy diagram.

The next lowest set of atomic orbitals is the 2s level. These spherical orbitals would comine very much like 1s orbitals, and we would get a similar diagram, only at a slightly higher energy level.

Most of the time, we aren't going to see both the σ_{1s}
and the
σ_{2s} displayed in the diagram. That's because if there are
any 2s electrons, then those 1s electrons are really core electrons, not
valence. They are buried a little deeper in the atom, and they don't play
a very important role in bonding. Ignoring the core electrons is pretty
common; if you recall, in atomic electron configurations we might write [He]2s^{2}2p^{4}
instead of 1s^{2}2s^{2}2p^{4} for oxygen; we were
ignoring the core. When we drew Lewis structures, we gave oxygen six
electrons, rather than eight; we were ignoring the core.

In the context of MO, suppose we do have 2s electrons.
That must mean that each atom has two 1s electrons of its own, for a total of
four. When those four electrons are filled into the MO diagram from the
bottom up, they will occupy both the bonding σ_{1s} and the antibonding σ_{1s}*.
The effect of both those combinations being occupied is to cancel out the
bonding; those two pairs of electrons remain non-bonding. So we can ignore
them and we aren't really missing anything.

The 2s orbitals aren't the only ones in the second
shell. There are also 2p orbitals. Remember, there are a couple of
very different ways in which p orbitals can combine with each other, depending
upon which axis they lie. If they do not lie parallel to each other --
that is, if they are prependicular to each other, such as a p_{x} and a
p_{y} -- then they cannot interact with each other at all. The p_{z}
on one atom could interact with the p_{z} on the other atom, however,
because they are parallel to each other.

Usually, we define the z axis as lying along the line
between the two atoms we are looking at. Two p_{z} orbitals would
lie along that axis, each with a lobe extending into the space between the
atoms, and each with another lobe extending away, in the other direction.

The resulting combinations are called σ because they do lie along the axis between the
atoms (that's exactly what
σ means, in terms of bonding). There is a σ combination, if the
overlapping lobes are in phase with each other, and σ* combination, if
those lobes are out of phase with each other. Because these new orbitals
arise from the atomic 2p orbitals, we call them σ_{2p} and σ_{2p}*.

There are also those p orbitals that do not lie along
the bond axis, or the axis between the two atoms. The p_{x}
orbitals are perpendicular to the p_{z} orbitals we just looked at, and
therefore perpendicular to the axis between the bonds. However, they are
still parallel to each other, and they can still form combinations. These
two orbitals would form an in-phase combination and an out-of-phase combination.

Note that the energetic separation between these two
combinations is a little smaller that the gap between the
σ_{2p} and σ_{2p}* levels. The difference
is related to the degree of overlap between the atomic orbitals. The
on-axis orbitals project strongly into the same space; they overlap a lot, and
they interact strongly. The off-axis orbitals brush against each other,
interacting less strongly, and resulting in smaller energetic changes. The
gap between the π_{2p} orbital and π_{2p}* orbital is therefore much smaller than the one between the
σ_{2p} and σ_{2p}* orbitals.

There are actually two of those off-axis p orbitals.
In addition to the p_{x} set, we would have a p_{y} set.
If the p_{x} set is in the plane of the screen, the p_{y} set
has one orbital sticking out in front and one hidden behind. Nevertheless,
the combinations between the two p_{y} orbitals are exactly the same as
what we saw between the two px orbitals. They are just rotated into a
perpendicular plane with respect to the p_{x} combinations.

We can put all of those 2p-based orbitals together in
one diagram. It's starting to get a little more crowded, but this diagram
is just a combination of the pieces we have already seen. Note that the
px, py, and pz atomic orbitals all start out at the same energy (we have stacked
them here so that you can still see the correlation between the atomic and
molecular orbitals). That means that the π_{2p} &
_{π2p}*
orbitals will be "nested" between the σ_{2p} &
σ_{2p}*_{ }
orbitals.

Finally, keeping in mind that the 2p orbitals are higher in energy than the 2s orbitals, we can combine those pictures into one diagram. Again, we have seen these individual pieces before; we are just assemblimg them, now.

While we are at it, we can can add in the electrons. How? It's
just the total number of valence electrons. For an example, we have used N_{2}.
Each nitrogen has five valence electrons, for a total of ten, so we have just
filled in ten electrons, starting at the bottom of the molecular orbital energy
level diagram. If this were another molecule, such as F_{2} or O_{2},
we would construct the overall diagram in a similar way, but just use a
different number of electrons.

This site is written and maintained by Chris P. Schaller, Ph.D., College of Saint Benedict / Saint John's University (with contributions from other authors as noted). It is freely available for educational use.

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Structure & Reactivity in Organic, Biological and Inorganic Chemistry by Chris Schaller is licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported License.

Send corrections to cschaller@csbsju.edu

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