Biochemistry Online: An Approach Based on Chemical Logic

Biochemistry Online

CHAPTER 9 - SIGNAL TRANSDUCTION

E:  Metabolic Control Analysis and Systems Biology  

BIOCHEMISTRY - DR. JAKUBOWSKI

04/16/16

Learning Goals/Objectives for Chapter 9E:
After class and this reading, students will be able to

  • describe the steady state in context of an isolated single enzyme-catalyzed reaction and for the enzyme when part of a complex metabolic pathway in vivo;
  • state and describe what is required to perform a metabolic control analysis on a biological pathway;
  • write ordinary differential equations to describe the change in concentration of analytes in a given set of coupled reactions;
  • write mass balance expressions for Eo and use it to calculate the fraction of each enzyme form assuming rapid equilibrium;
  • draw "wire" diagrams showing activation and inhibition for coupled reactions;
  • define the flux control coefficient verbally and in the form of a mathematic equation, and explain how to obtain it graphically;
  • use flux control coefficients to explain how control of flux in a pathway is distributed through all enzyme-catalyzed reactions in that pathway;
  • analyze the result of a flux control analysis of a pathway like glycolysis;
  • describe why small changes in the enzymes that have the greatest ΔG values in glycolysis have minor effects in the metabolic flux in glycolysis;
  • define the concentration control coefficient verbally and in the form of a mathematic equation
  • analyze the result of a concentration control analysis of a pathway like glycolysis;
  • define the elasticity coefficient verbally and in the form  form of a mathematic equation, and explain how to obtain it graphically
  • state whether the different metabolic control coefficients are global properties of the system or local properties of a given enzyme.

E1. Introduction to Metabolic Control Analysis

E2. Basic Principles of Metabolic Control Analysis (MCA)

E3. Metabolic Control Analysis and Simple Enzyme Inhibition

E4. The Flux Control Coefficient

E5. Concentration Control and Elasticity Coefficients

E6. Links and References

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