Biochemistry Online: An Approach Based on Chemical Logic
Biochemistry Online: An Approach Based on Chemical Logic
List of Tables
04/17/16
Chapter 1: Lipid Structure
- Names and structures of the most common fatty acids
- Membrane lipid composition of average mammalian cell
- Phase Transition Temperatures for glycerophospholipids
- Thermodynamic Parameters for Transfer of Aliphatic Alcohols from the Pure Liquid to Water at 25oC
- Thermodynamic Parameters for Transfer of Hydrocarbons from Water to Interior of Dodecyl Sulfate Micelles and from Water to Pure Liquid Hydrocarbon State
Chapter 2: Protein Structure
- Beta helices (understanding conformation)
- pKa values of ionizable side chains in a series of protein
- Amino Acid Partitioning Into Membrane Regions (prot fold/stab)
- Summary of Partition Coefficient (KP = mhydration sphere/mbulk) for urea and GuHCl effects on protein stability for BSA
- Site-Specific Mutagenesis: Experimental and Theoretical Changes in Protein Stability
- Asn to Ala mutants: H bonds and Protein Folding
- Possible Explanation of Destabilization of Asn to Ala Mutants
- Packing Densities
- Chou-Fasman Amino Acid Propensities
- Hydrophobicity Indices for Amino Acids
- Rhodopsin Hydropathy Results
Chapter 3: Carbohydrates
Chapter 4: DNA, Genomics, and Proteomics
Chapter 5: Binding
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Calculated koff and t1/2 for binary complexes assuming diffusion-controlled kon
- Characteristics of Antibody:Hen Egg Lysozyme Complexes
- Free Energy of Oxygen Binding to Hb T and D.
- Prokaryotic promoter sequences
- Eukaryotic Response Elements (RE)s
- Transcription Factors: Functional Classification
Chapter 6: Transport and Kinetics
- Permeability coefficient (cm.s-1) of natural and synthetic membranes to D-Glucose and D-mannitol at 25oC.
- Km and kcat values for various enzymes
- Diffusion controlled enzymes
Chapter 7: Catalysis
- Entropy changes on binding reactions
- Chymotrypsin substrate cleavage, 25oC, pH 7.9
- Kinetic constants for chymotrypsin cleavage of N-acetyl-L-Trp Derivatives - N-acetyl-L-Trp-X
- Classification of Proteases
- Time Scales of Dynamic Events in Enzyme Catalysis
- Chymotrypsin Activity in Organic Solvents
- Half-Life of Chymotrypsin Activity in Water and Octane
- Chyymotrypsin Specificity Changes in Water and Octane
Chapter 8: Oxidation/Phosphorylation
- Standard Reduction Potential Table
- Cyclooxygenase Activities
- Biological Effects of n-3 polyunsaturated fatty acids EPA (20:5) and DHA (22:6)
Chapter 9: Signal Transduction
- Ion permeability of phosphatidyl serine vesicles
- Typical ion concentrations and permeabilities for mammalian membranes.
- Relative Permeabilities of the Na and K Channels in Axon Membranes
- Some enzymes regulated by cAMP-dependent phosphorylation by PKA
- The Kinome
- Examples of different signals, receptors, Ga like-subunits, second messenger changes, and affected intracelluar enzymes
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Biochemistry Online by Henry Jakubowski is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.